The Tule Perch, Hysterocarpus traskii, is a viviparous and externally monomorphic, internally fertilizing fish. Despite appearing monomorphic, males and females are expected to differ in body shape because the different reproductive roles occupied by the sexes should influence patterns of selection and, ultimately, lead to differences in morphology. The objectives of this study were to determine if the Sacramento–San Joaquin subspecies of Tule Perch (H. t. traskii) exhibit (1) sexual dimorphism in body shape, (2) size-related changes in body shape, and (3) sexual size dimorphism. Geometric morphometric analyses indicated that H. t. traskii exhibited significant sexual dimorphism of body shape and identified the mid-body and caudal peduncle regions as the most effective discriminators between the sexes. Females were narrower through the caudal peduncle and mid-body and had anal-fin origins that were more posteriorly located than males. Additionally, H. t. traskii exhibited significant size-related changes in body shape. Larger fish were deeper bodied with blunter snouts and wider caudal peduncles. The eyes of larger fish were relatively smaller and located higher on the body than those of smaller fish. Hysterocarpus t. traskii did not exhibit differences between the sexes in standard length, but males were significantly heavier than females.