Roots of dandelion were exhumed from the soil monthly from 1997 to 1999 near Scottsbluff, NE, to assess the seasonal changes in total sugars, glucose, fructose, sucrose, and fructans. In the spring, the initiation of plant growth was accompanied by increased fructose and, to a lesser degree, glucose as a percentage of total sugars. During June, July, and August, the percentage of total sugars with a middle to high degree of polymerization (DP) fructans increased. The DP in fructans changed with reduced rainfall and was associated with increased fructose and decreased high-DP fructans as a percentage of total sugars. Decreasing or freezing soil temperatures in the fall were associated with increased fructose and decreased high-DP fructans as a percentage of total sugars. When soil froze in December, the percentage of total sugars as sucrose and low-DP fructans increased and mid- to high-DP fructans decreased. The seasonal fluctuations of glucose, fructose, sucrose, and various fructan polymers may be one mechanism that allows dandelion to adapt to environmental stresses and gain a competitive advantage over other plants in the community. An understanding of these seasonal fluctuations in sugars may also allow better timing of biological, mechanical, and chemical control practices for improved plant management.

Nomenclature: Dandelion, Taraxacum officinale Weber in Wiggers TAROF.

Laboratory and greenhouse studies were conducted on redvine and trumpetcreeper to characterize leaf surface and wax composition, determine responses of these weeds to glyphosate, characterize the nature of interactions between glyphosate and several selective postemergence herbicides (e.g., acifluorfen, bentazon, chlorimuron, imazaquin, and pyrithiobac) used in soybean and cotton, and determine the effects of various adjuvants on glyphosate activity on both species. Trumpetcreeper was consistently more susceptible to glyphosate than redvine. Glyphosate spray solution droplets had lower contact angle in trumpetcreeper than in redvine. Micro-roughness of the trumpetcreeper adaxial leaf surface was greater due to trichomes and glands compared to that of redvine, which had no trichomes or glands. Stomata or crystal wax deposition on the adaxial leaf surface were not observed in either species. The wax mass per unit area (22 to 37 µg cm⁻²) was similar regardless of the leaf age in both species. Epicuticular wax consisted of hydrocarbons, alcohols, acids, and triterpenes. Wax composition of young leaves of redvine was relatively hydrophilic (72% alcohols and acids, 24% hydrocarbons) compared to the hydrophobic components (23% alcohols and acids, 49% hydrocarbons) of old leaves. In contrast, wax of trumpetcreeper young leaves was relatively hydrophobic (9% alcohols and acids, 29% hydrocarbons), whereas old leaves had similar levels of hydrophilic and hydrophobic components (28% alcohols and acids, 31% hydrocarbons). Glyphosate mixed with selective postemergence herbicides were antagonistic when applied to redvine and trumpetcreeper, except acifluorfen. Various adjuvants did not increase glyphosate efficacy except ammonium sulfate, which increased glyphosate efficacy when applied alone to trumpetcreeper. These results showed that lower glyphosate efficacy was related to the more hydrophobic nature of redvine epicuticular waxes compared to that of trumpetcreeper.

Nomenclature: Acifluorfen; bentazon; chlorimuron; glyphosate; imazaquin; pyrithiobac; cotton, Gossypium hirsutum L.; redvine, Brunnichia ovata (Walt.) Shinners BRVCI; soybean, Glycine max (L.) Merr.; trumpetcreeper, Campsis radicans (L.) Seem. ex Bureau CMIRA.

Kochia plants resistant (R) to field rates of dicamba were characterized for their frequency of occurrence and levels of resistance and for the physiological fate of applied ¹⁴C-dicamba. Of 167 randomly sampled fields and seven fields identified by producers to contain R kochia, 19 contained plants that produced 1% or more R progeny. The maximum percentage of R progeny produced by parental plants from any field was 13%. An inbred R line derived from a field collection was 4.6-fold more resistant to dicamba than an inbred susceptible (S) line. Rates of ¹⁴C-dicamba uptake and translocation were similar in R and susceptible (S) plants up to 168 h after treatment (HAT). Concentrations of the primary metabolite, 5-hydroxy dicamba, were similar in R and S tissues up to 60 HAT, although amounts were significantly greater in R treated leaves by 96 and 168 HAT. However, because there were negligible levels of dicamba metabolites in R shoots and because the rate of metabolism was relatively slow, the observed changes were inadequate to account for observed resistance levels. Thus, dicamba resistance in kochia cannot be attributed to differential herbicide absorption, translocation, or metabolism. These findings, together with our field observations on the unusually slow spread of resistance within and among fields may indicate that dicamba resistance is a quantitative trait.

Nomenclature: Dicamba; kochia, Kochia scoparia (L.) Schrad KCHSC.

Giant sensitiveplant interference at different population densities in cassava established at 10,000 plants ha⁻¹ was investigated on a Ferric Luvisol in a humid tropical environment. Interference for 12 mo was compared at 0, 10,000, 20,000, 30,000, and 40,000 plants ha⁻¹ and at natural populations (averaging 630,000 plants ha⁻¹) in four randomized complete blocks. Results showed that the order of cassava growth parameter response to giant sensitiveplant interference for 12 mo was leaf number > height > stem girth > leaf size = petiole length. The natural population density of giant sensitiveplant reduced growth faster and more than populations of 10,000 to 40,000 plants ha⁻¹ in cassava. All giant sensitiveplant populations from 10,000 plants ha⁻¹ and higher reduced storage root yield in cassava 12 mo after planting. Yield reduction increased as giant sensitiveplant population increased and the highest reduction of 85% occurred in the natural population of giant sensitiveplant.

Nomenclature: Cassava, ‘TMS 30572’, Manihot esculenta Crantz; giant sensitiveplant, Mimosa invisa Mart. MIMIN.

Research was conducted to characterize the phenology of common lambsquarters growth parameters as influenced by climatic variation among years. Treatments included soybean or corn grown alone, common lambsquarters with soybean or corn, and common lambsquarters grown alone. Common lambsquarters leaf area and plant height phenology differed among years and was variable within treatments. Conversely, crop leaf area and plant height phenology did not differ among years and was less variable within a treatment than common lambsquarters. Weed relative leaf area and relative volume differed among years because of differences in crop and common lambsquarters leaf area and plant height phenology. Differences in common lambsquarters relative leaf area and relative volume among years may explain differences in previously reported crop yield responses to weed infestations between sites and years. Although common lambsquarters relative leaf area and relative volume differed among years, variability as indicated by regression coefficients of determination was also high within year and treatment. Crop leaf area and plant height phenology were well described by regression equations, with r² values greater than 0.68. Therefore, low coefficients of determination for relative leaf area and relative volume models were attributed to variability in common lambsquarters within a treatment.

Nomenclature: Common lambsquarters, Chenopodium album L. CHEAL; field corn, ‘Dekalb DK493SR’, Zea mays L.; soybean, ‘Asgrow XP19505RR’ and ‘AG2101RR’, Glycine max L. Merr.

Studies were conducted to determine the effect of interference between tropic croton (Croton glandulosus) and cotton (Gossypium hirsutum) on plant growth and productivity. Tropic croton height was not affected by weed density, but cotton height decreased with increased weed density 10 wk after planting. Tropic croton biomass per plant was not affected by weed density, but total weed biomass per meter of crop row increased with weed density. Cotton lint yield decreased linearly 2 kg ha⁻¹ with each gram increase in weed dry biomass per meter of row. Percent yield loss–density relationship was described by the rectangular hyperbola model. Estimated coefficients A (maximum yield loss) and I (yield loss per unit density as density approaches zero) were 129.6 ± 42.2 and 35.6 ± 8.0%, respectively, when asymptotic iterations were based on least sums of squares. When A was constrained to 100% yield loss, I was 42.5 ± 5.1%. Results indicated that tropic croton was less competitive with cotton than many weeds but represents an economic threat to cotton growers.

Nomenclature: Cotton, Gossypium hirsutum L. ‘Deltapine 51’; tropic croton, Croton glandulosus var. septentrionalis Muell.-Arg. CVNGS.

The effect of shoot feeding by the biocontrol agents, Galerucella calmariensis and Galerucella pusilla (Coleoptera: Chrysomelidae) on purple loosestrife (Lythrum salicaria) seed production and seed germination was quantified in two Minnesota wetlands. In a wet meadow where Galerucella spp. were present on isolated plants, feeding by adults and larvae during shoot elongation resulted in stunting and malformation of shoot tips. There was a subsequent reduction in purple loosestrife inflorescence length and number of flower buds and seed capsules. As Galerucella spp. larvae preferentially fed on shoot meristems, even low levels of feeding on a whole-plant basis (approximately 10% defoliation) reduced seed production. In a sedge meadow wetland with severe feeding damage (a minimum of 70% leaf defoliation), few to no flower buds formed on plants, and subsequently, few to no seed capsules were produced on purple loosestrife plants. Of the few capsules that were produced, number of seeds per capsule and percent germination of seeds did not differ from control plants. In both wetlands, feeding on a main shoot of purple loosestrife did not result in a compensatory increase in the number of axillary inflorescences. Feeding by Galerucella spp. and the subsequent reduction in number of seeds produced on purple loosestrife plants will decrease the number of seeds available for dissemination to new sites. Fewer seeds will enter the seedbank, and over time, feeding by Galerucella spp. will decrease the number of seeds available for seedling recruitment. The benefit of leaf defoliation on purple loosestrife plants caused by Galerucella spp. feeding has been reported. In this study, we have quantified the additional benefits of reduced seed production from Galerucella spp. feeding on purple loosestrife in North America.

Nomenclature: Purple loosestrife, Lythrum salicaria LYTSA; Galerucella calmariensis; Galerucella pusilla.

Cost-effective weed management requires accurate estimates of yield and the potential yield loss resulting from weed infestations. However, crop yield and the effects of weeds are highly variable across years and locations. Ecophysiological models may be useful for predicting the effects of environment and management on crop and weed growth and competitive ability. Ability of the model INTERCOM to predict corn (Zea mays) growth and yield, velvetleaf (Abutilon theophrasti) interference on corn yield loss, and single-year economic threshold velvetleaf density (T_e) was evaluated using 13 data sets collected in four states. Predicted and observed monoculture corn total aboveground biomass and leaf area index were in close agreement for most of the growing season. Predicted and observed weed-free corn yields were in agreement for yields ranging from 8 to 13 Mg ha⁻¹ but were over- and underpredicted under low-yielding and near-optimal production conditions, respectively. Predicted and observed corn yield loss agreed well across the full range of observed velvetleaf densities for five to nine location years, depending on the performance criterion used. Estimates of T_e calculated from predicted weed-free yield and yield loss relationships were an average of 6% smaller than those calculated from observed data, indicating that the model predicts a conservative value of T_e in most cases. Although results are encouraging, they indicate that further research is needed to improve the capacity of INTERCOM for predicting weed-free yield and corn–velvetleaf interference.

Nomenclature: Corn, Zea mays L.; velvetleaf, Abutilon theophrasti Medic. ABUTH.

Palmer amaranth (Amaranthus palmeri) is a major weed in corn (Zea mays) fields in the southern Great Plains of the United States. Field studies were conducted in 1996, 1997, and 1998 near Garden City, KS, to evaluate the effects of Palmer amaranth density and time of emergence on grain yield of irrigated corn and on seed production of Palmer amaranth. Palmer amaranth was established at densities of 0.5, 1, 2, 4, and 8 plants m⁻¹ of corn row both concurrently at corn planting and when corn was at the three- to six-leaf stage. The control plots were weed free. The Palmer amaranth planted with corn emerged with corn, whereas that planted later emerged at the four-, six-, and seven-leaf stages of corn. The Palmer amaranth emerging with corn reduced yield from 11 to 91% as density increased from 0.5 to 8 plants m⁻¹ of row. In contrast, yield loss from Palmer amaranth emerging later than corn was observed only when the emergence occurred at the four- and six-leaf stages. The corn leaf area index (LAI) decreased as Palmer amaranth density increased. Reduction in corn LAI from Palmer amaranth interference was smaller for the second emergence date than for the first emergence date. Seed production per Palmer amaranth plant decreased with greater density, but seed per unit area increased from 140,000 to 514,000 seeds m⁻² at densities of 0.5 and 8 plants m⁻¹ of row, respectively, when Palmer amaranth emerged with corn and from 1,800 to 91,000 seeds m⁻² at the same densities for later emergence dates. Although Palmer amaranth is highly competitive in corn, this study shows that yield loss is affected more by time of emergence than by density.

Nomenclature: Corn, Zea mays L. ‘DK 592SR’; Palmer amaranth, Amaranthus palmeri S. Wats. AMAPA.

Treatment interactions affecting endemic populations of annual grass and broadleaf weeds, corn rootworm larvae (CRW), corn earworm (CEW), European corn borer (ECB), and common rust in sweet corn were investigated in three field studies near Arlington, WI, in 1996 and 1997. In all environments, weed biomass was affected only by the weed control treatments with cultivation resulting in the highest weed biomass. Corn root damage was affected only by the CRW insecticide treatments in the early- and late-planted environments in 1997 (E97 and L97). Both weed control and ear insect (CEW and ECB) control treatments affected corn ear damage by CEW and ECB. In E97 and L97, more insect ear damage occurred in plots with 1× herbicide treatments than in cultivation treatments. In L97, the ear insect treatment decreased ear damage 55% compared to untreated plots. The interaction between ear insect and weed control treatments affected the number of CEW found per 10 ears in L97. The interaction between hybrid rust and weed control treatments influenced common rust severity in all environments. A hybrid rust by CRW by ear insect treatment interaction also affected common rust severity in E97 and L97. ‘Jubilee’ hybrid (rust-susceptible) corn treated with both insecticides had greater common rust severity than nontreated Jubilee corn. Sweet corn yield was affected most by weed control in all environments, with the lowest yields occurring in cultivated plots. Sweet corn yield did not differ between the 1× and ⅓× herbicide treatments in all environments. The interaction among hybrid rust by CRW by ear insect treatments also affected yield in E97 and L97. An important component of this interaction was the CRW treatment, as sweet corn yield was higher in treated than nontreated plots. The interactions in this study indicate that the best chances for developing comprehensive thresholds for sweet corn pests in the Midwest are for CEW, ECB, and common rust.

Nomenclature: Cyanazine; metolachlor; permethrin, (3-phenoxyphenyl) methyl ( ± ) - cis, trans -3- ( 2, 2-dichloroethenyl ) -2, 2-dimethylcyclopropane-carboxylate; tefluthrin, (2,3,5,6-tetrafluoro-4-methylphenyl)methyl-(1α,3α)-(Z-(±)-3-(2-chloro-3,3,3-trifluoro-1-propenyl)-2,2-dimethylcyclopropanecarboxylate; common rust, Puccinia sorghi Schw.; corn earworm, Helicoverpa zea Boddie; corn rootworm, Diabrotica spp.; European corn borer, Ostrinia nubilalis Hubner; sweet corn, Zea mays L. ‘Heritage’, ‘Jubilee’.

The relationship between species richness and sample area has been characterized in many natural communities but has rarely been examined in crop–weed communities. We determined the species–area relationship in short-term (≤4 yr) and long-term (>15 yr) moldboard-plowed (MP), chisel-plowed (CP), and no-tillage (NT) fields cropped to corn and in short-term MP, CP, and NT fields cropped to soybean. A total of 10 corn fields and 10 soybean fields were sampled for species richness in 14 nested sample areas that ranged from 0.0625 to 512 m². The influence of sample area on frequency of species occurrence was also determined. Species richness was greater in long-term NT fields than in tilled or short-term NT fields. The species–area relationship in tilled and short-term NT fields was best described by an exponential function. In contrast, a power function was the best fit for the species–area relationship in long-term NT fields. The functional minimum area required to represent 75% of the total weed species in tilled and short-term NT fields was 32 m². A functional minimum area could not be determined in long-term NT fields because species richness continued to increase over the range of sample areas. Regression functions predicted that sample areas of 1 m² would contain less than 50% of the observed maximum species richness in these fields. Sample areas of 36 m² in tilled and short-term NT fields and 185 m² in long-term NT fields were predicted to measure 75% of observed maximum species richness in these fields. Pigweed species and common lambsquarters occurred at high frequencies and were detected in most sample areas. This information could be used to better define sample area requirements and improve sampling procedures for species richness of weed communities.

Nomenclature: Common lambsquarters, Chenopodium album L. CHEAL; corn, Zea mays L.; pigweed species, Amaranthus spp.; soybean, Glycine max (L.) Merr.

A field study was conducted to determine the effects of giant ragweed emergence time and population density on corn grain yield, giant ragweed seed production, and giant ragweed predispersal seed losses. When weeds and crop emerged concurrently, hyperbolic regression of percent corn yield loss on giant ragweed population densities of 1.7, 6.9, and 13.8 weeds per 10 m² gave a predicted loss rate of 13.6% for the first weed per 10 m² in the linear response range at low densities and a maximum yield loss of 90% at high weed densities. Crop yield loss response to weed density was linear when giant ragweed emerged 4 wk after corn, and the regression coefficient indicated a yield loss rate of 1% per unit increase in weed density. A larger proportion of the variation in corn yield loss was explained by weed density (r² = 0.99) than by weed biomass (r² = 0.81). There was a positive linear relationship between giant ragweed seed production and weed density at each weed emergence time. When giant ragweed emerged with corn, regression equations for 1997 and 1998 gave a predicted seed rain of 146 and 238 seeds m⁻² per unit increase in weed density, respectively. In both years when giant ragweed emerged 4 wk after corn, predicted seed rain was 16 seeds m⁻² per unit increase in weed density. Viability of total giant ragweed seed was 56 and 38% in 1997 and 1998, respectively, and was not affected by weed emergence time or weed density. Feeding by insect larvae accounted for 13 to 19% of giant ragweed seed viability losses. Granivorous insects infesting giant ragweed seed were identified as a fruit fly (Diptera: Tephritidae), two weevils (Coleoptera: Curculionidae), and a moth (Lepidoptera: Gelechiidae).

Nomenclature: Fruit fly, Euaresta festiva (Loew); moth, Chionodes mediofuscella; weevil, Smicronyx flavicans and Conotrachelus geminatus; corn, Zea mays L.; giant ragweed, Ambrosia trifida L. AMBTR.

Annual emergence and seed persistence of common waterhemp, velvetleaf, woolly cupgrass, and giant foxtail were characterized in central Iowa for 4 yr following burial of seeds collected and buried in autumn 1994. First-year emergence as a percentage of the original seed bank ranged from 5 to 40%, and the relative order was common waterhemp < velvetleaf < giant foxtail < woolly cupgrass. During the second and third years, there were no differences in percent emergence among species, with emergence percentages ranging from 1 to 9% of the original seed bank. During the fourth year, seedlings continued to emerge from only the velvetleaf and common waterhemp seed banks. A greater percentage of common waterhemp seed persisted each year and 12% of the original seed was recovered after 4 yr of burial. Five percent of the velvetleaf was recovered at the end of the fourth year. No woolly cupgrass and giant foxtail seed was recovered after the third and fourth years. The proportion of the seed that was accounted for from year to year through emergence and seed recovery varied by species and year. Total recovery of velvetleaf ranged from 61 to 87%, common waterhemp from 50 to 81%, woolly cupgrass from 29 to 79%, and giant foxtail from 23 to 79%. Based on the results of this research, velvetleaf and common waterhemp form more persistent seed banks than woolly cupgrass and giant foxtail. Therefore, woolly cupgrass and giant foxtail should be more amenable to management through seed bank depletion than velvetleaf and common waterhemp.

Nomenclature: Common waterhemp, Amaranthus rudis Sauer AMATA; giant foxtail, Setaria faberi Herrm. SETFA; velvetleaf, Abutilon theophrasti Medik. ABUTH; woolly cupgrass, Eriochloa villosa (Thunb.) Kunth ERBVI.

A single dominant mutation conferring resistance to aryloxyphenoxypropionate (AOPP) and cyclohexanedione (CHD) herbicides was incorporated into a quantitative model for the population development of wild oat. The model was used to predict the times required to develop field resistance in a number of different scenarios. Field resistance was defined as a threshold of four plants m⁻² surviving herbicide treatment, and in most scenarios, a very large proportion of these plants were resistant. The model predicts that plow cultivation could delay the development of resistance relative to tine cultivation. With an initial seed bank of 100 seeds m⁻² and annual use of AOPP/CHD herbicides, which kill 90% of susceptible but no resistant plants, field resistance develops in 15 yr with annual tine cultivation 10 cm deep but only after 23 yr with annual plowing 20 cm deep. The model predicts that herbicide rotation can dramatically increase the times required for field resistance to develop in a tine cultivation system. With annual use of AOPP/CHD herbicides, field resistance develops in 15 yr, whereas using alternative modes of action 1 in 2 yr delays field resistance to 28 yr. The model predicts that resistance can be delayed for at least 66 yr if three herbicides, each with a different mode of action, are rotated and each herbicide causes 90% mortality. The model predictions on the number of years required for field resistance to develop are not highly sensitive to the initial density of the seed bank (range modeled = 10² to 10⁴⁾, the mutation rate for resistance (10⁻⁴ to 10⁻⁷ per generation), the rate of outcrossing (0.1 to 100%) or the herbicide kill rate (80 to 95%).

Nomenclature: Wild oat, Avena fatua L. AVEFA; aryloxyphenoxypropionate herbicide; cyclohexanedione herbicide.

This study was conducted to determine the effects of three commonly applied soybean (Glycine max) herbicides (glyphosate, imazethapyr, and pendimethalin) on the mycelial growth, sclerotial production, and viability of Rhizoctonia solani isolates [anastomosis groups AG-1, AG-2-2, and AG-4] under controlled conditions. Pendimethalin significantly reduced mycelial growth of all three R. solani isolates investigated, whereas effects of the herbicides imazethapyr and glyphosate were not significant. Sclerotial production was affected differently by the three herbicides. Isolates AG-1 and AG-2-2 produced sclerotia both in vitro and in vivo, whereas isolate AG-4 did not produce sclerotia in vitro. In vitro AG-1 isolate showed a decrease, and AG-2-2 isolate showed an increase in sclerotial production in the presence of herbicide. In contrast, both AG-1 and AG-2-2 isolates showed reduction in sclerotial production in vivo compared to AG-4 isolate, which showed an increase in sclerotial production in the presence of herbicides. Sclerotial production was generally higher in vivo than in vitro. The number of sclerotia produced per unit sclerotial weight was often higher in the presence of herbicides. Viability of sclerotia produced in the presence of herbicides was not significantly different from the no-herbicide control.

Nomenclature: Glyphosate; imazethapyr; pendimethalin; Rhizoctonia solani Kuhn [teleomorph Thanatephorus cucumeris (A.B. Frank) Donk] AG-1, AG-2-2, and AG-4; soybean, Glycine max (L.) Merr.

As new targets for herbicide action are identified from genomics research, large and diverse chemical collections and high-throughput assays will be required to maximize the probability of identifying compounds with activity at these targets. The new technology of combinatorial synthesis and high-throughput, miniaturized, in vitro screening, which has become an integral part of pharmaceutical discovery, is now being applied to discover new herbicides, insecticides, and fungicides. Depending on the synthesis design, the products of a combinatorial synthesis, referred to as a library, may be either unbiased or biased toward an intended target. Unbiased libraries are generally prepared to maximize chemical diversity around a central core structure or scaffold. Often containing 10,000 to 30,000 compounds each, these libraries are encoded and prepared by a combinatorial methodology known as mix-and-split, which produces compounds as mixtures. The preparation of these large libraries requires robust synthetic methodology that will accommodate reactants (building blocks) with diverse structures. Biased libraries tend to be smaller in size, ranging from 100 to 2,500 compounds. They are prepared using synthetic methodology that produces collections of discrete compounds (parallel synthesis) or pools of five to 10 compounds per pool (mix-and-split synthesis). Compounds in biased libraries are rationally designed to contain structural motifs or pharmacophores that are presumed to be beneficial for activity on the intended target. Screening is conducted in microtiter assay plates containing from 96 to 864 wells per plate. For in vitro assays, high-density formats (864 wells per plate) are preferred. The higher density format allows for testing higher concentrations and fewer compounds per well, which leads to a more rapid identification of the active molecules. For in vivo assays, 96-well formats are preferred. Regardless of the microtiter plate format, multiple beads are distributed into plates by robotic pipetting, and single beads are distributed via robot-controlled suction pipets. Test compounds are cleaved from the beads and transferred in solvent to assay plates. Required reagents are added to the plate to initiate the assay. A wide range of in vitro and in vivo herbicide, insecticide, and fungicide assays can be conducted in microtiter plates.

Nomenclature: Agriculture; discovery; genomics; high-throughput synthesis; new chemicals; screening.

Technological advances in molecular biology have contributed substantially to our understanding of plant genetic diversity. Early studies of allozyme variation employing protein electrophoresis revealed that plant populations have high levels of genetic diversity, most of the variation at polymorphic loci is found within populations, and geographic range and breeding system explain the largest proportion of variation in genetic diversity. With the discovery of restriction endonucleases, the first DNA-based markers allowed the detection of variation in DNA sequences in plant population studies. More recently, techniques that utilize the polymerase chain reaction have allowed a more representative assessment of genetic variation in plants by screening multiple loci distributed throughout the genome. The analyses reveal sufficient polymorphism for the examination of fine-scale genetic differences among individuals. Information on plant genetic diversity is also emerging from studies of plant genome structure. Comparative genetic mapping studies of members of the Brassicaceae, Poaceae, and Solanaceae show that gene content is highly conserved between closely related species, although gene order on a chromosomal segment may differ between species. Comparative sequencing studies reveal higher degrees of diversity at the microstructural (less than 1 million base pairs) level than predicted at the genetic map level and suggest that genes are densely packed in gene-rich regions, rather than randomly distributed along chromosomes in species with large genomes. Sequencing of the entire genomes of rice and Arabidopsis thaliana will help identify genes controlling agronomically important traits, improve our understanding of genetic variation for fitness-related traits in wild plant populations including weed species, resolve evolutionary relationships among plant taxa, and potentially revolutionize current ideas on plant diversity and evolution.

Nomenclature: Mouse-ear cress, Arabidopsis thaliana (L.) Heynh.; rice Oryza sativa L.

With rapid progress being made in deciphering plant genomic sequences, determining the function of these genes is one of the main challenges that plant molecular biologists face today. Herbicidal inhibitors have been very useful for understanding gene function in at least two examples, represented by herbicidal inhibitors of hydroxyphenylpyruvate dioxygenase (HPPD) and deoxyxylulosephosphate reductoisomerase (DXR). In the first, an albino mutant of Arabidopsis isolated during the study of carotenoid biosynthesis was found to have an intact carotenoid biosynthetic pathway. A number of “bleaching herbicides” in development at about the same time (e.g., sulcotrione) produced similar symptoms by strongly inhibiting HPPD, a key enzyme in plastoquinone biosynthesis. Examination of the Arabidopsis mutant revealed that the HPPD gene had been inactivated in the albino plants. Inhibition of the HPPD pathway also led to reduced levels of tocopherol (vitamin E), an end product of the pathway. Further studies and manipulation of the pathway produced plants with significantly higher levels of vitamin E. This result is a clear demonstration of how an herbicidal inhibitor was able to lead to the identification of a gene that was responsible for a particular phenotype. As a second example, identification of fosmidomycin as a specific inhibitor of DXR in the recently elucidated nonmevalonate pathway of isopentenyl pyrophosphate (IPP) biosynthesis was instrumental in furthering the understanding of an important route to synthesis of many important terpenoid products.

Nomenclature: Fosmidomycin, 3-(N-formyl-N-hydroxyamino)propylphosphonic acid; sulcotrione; Arabidopsis mutant.

A framework is presented to consider the value and utility of molecular-based research in weed science. Four themes are used to illustrate why adopting molecular approaches might be helpful. First, the rationale for academic institutions adopting molecular approaches is outlined, including strengths, weaknesses, opportunities, and threats (SWOT) analysis. Second, research strategy and synergies developed into other functions, such as education, consultancy, and business, is considered. Third, project management as a vehicle for integrating technical and personnel skills is examined. Finally, specific examples of outputs such as the application of functional genomics for herbicide discovery are described. The adoption of molecular-based methods can have far-reaching benefits in agriculture and biotechnology. Communicating these benefits within the scientific community and beyond, particularly to end users, is of fundamental importance.

The incidence of auxinic herbicide resistance in plants has increased worldwide. Auxinic herbicides were the first selective organic herbicides developed and have been used in agriculture for over 50 yr, primarily for the selective control of broadleaf weeds in cereal crops. However, the mode of action of auxinic herbicides and the molecular basis of auxinic herbicide resistance remain unknown, although an auxin-binding protein (ABP) is proposed to be the primary target site. Using auxinic herbicide-resistant (R) and -susceptible (S) biotypes of wild mustard as a model system, we have extensively studied the mode of action of auxinic herbicides and the resistance mechanisms at the physiological, biochemical, and molecular genetic levels. There are no differences in uptake, transport, and metabolism of auxinic herbicides between the R and S biotypes. Based on these results, as well as the studies on the role of auxin-enhanced ethylene biosynthesis and calcium in mediating the auxinic herbicide resistance, we hypothesize that resistance of the R biotype to auxinic herbicides is due to an altered target site, possibly an auxin receptor. We have identified and characterized a small ABP gene family as well as their cDNAs from both R and S of wild mustard. Amino acid changes were found in the ABP of the R biotype. Functional and mutational analyses of these genes are underway to determine the role of ABP in mediating auxinic herbicide resistance. In this review, we focus on the mode of action of auxinic herbicides and the molecular basis of auxinic herbicide resistance in wild mustard.

Nomenclature: 2,4-D; dicamba; MCPA; MCPP; picloram; ACC, 1-aminocyclopropane-1-carboxylic acid; MACC, 1-malonylaminocyclopropane-1-carboxylic acid; wild mustard, Brassica kaber (DC.) L.C.Wheeler SINAR.

Many advances in disciplines such as chemistry, biochemistry, plant breeding, genetics, engineering, and others have been applied in a positive manner to improve knowledge in weed science. The emerging field of genomics is likely to have a similar positive effect on our understanding of weeds and their management in various plant agriculture systems. Genomics involves the large-scale use of molecular techniques for identification and functional analysis of complete or nearly complete genomic complements of genes. Commercial application of genomics has already occurred for improvement in certain crop input and output traits, including improved quality characteristics and herbicide and insect resistance. Additional commercial applications of genomics in weed science will be identification of genes involved in a crops' competitive ability. Genes controlling early crop shoot emergence, rapid early-season leaf and root development for fast canopy closure, production of allelochemicals for natural weed control, identification of novel herbicide target sites, resistance mechanisms, and genes for safening crops against specific herbicides can and will be identified. Successful crop improvement in these areas using the tools of genomics will dramatically affect weed–crop interactions and improve crop yields while reducing weed problems. In relation to improved basic knowledge of weeds and the resulting ability to improve our weed management techniques, genomics will offer the weed science community many new and exciting research opportunities. Scientists will be able to determine the genetic composition of weed populations and how it changes over time in relation to agricultural practices. Identification of genes contributing to weediness, perennial growth habit, herbicide resistance, seed and vegetative structure dormancy, plant architecture and morphology, plant reproductive characters (outcrossing and hybridization, introgression), and allelopathy will be identified and utilized with high-throughput DNA sequencing and other genomics-based technologies. Using genomics to improve our understanding of weed biology by determining which genes function to affect the fitness, competitiveness, and adaptation of weeds in agricultural environments will allow the development of improved management strategies. This review provides a summary of the various plant genomic research methods being used. Information is provided concerning the current state of molecular research in various areas of weed science and specific genomic research currently being conducted at Purdue University using transfer DNA (T-DNA) activation tagging to generate large populations of mutated plants that can be screened for genes of importance to weed science.

The discovery of the first systemic or hormone herbicides, 2,4-D, 2,4,5-T, and MCPA, initiated an agricultural revolution and modern weed science. The finding of these herbicides was a striking case of multiple independent discovery by four groups of workers in two countries, the United Kingdom and the United States: William G. Templeman and associates at Imperial Chemical Industries; Philip S. Nutman and associates at the Rothamsted Agricultural Experiment Station; Franklin D. Jones at the American Chemical Paint Company; and Ezra Kraus, John Mitchell, and associates at the University of Chicago and the U.S. Department of Agriculture. Because of wartime and commercial secrecy, the usual procedures of scientific publication and patent disclosure were not followed; instead, the first scientific report on these herbicides occurred in a publication by workers who were not original discoverers. Considerable confusion consequently resulted concerning the discovery and the discoverers. This confusion has not been completely dispelled in subsequent years. The present report summarizes the complete story, clarifies the chronology of the discoverers and their publications, and makes the case that all four groups of workers deserve credit for this revolutionary advance. The scientific background of the discovery and events in its immediate aftermath, especially the ticklish patent situation, are also briefly chronicled.

Nomenclature: 2,4-D; MCPA; 2,4,5-T.