Journal of Coastal Research
Published by: Coastal Education and Research Foundation
Journal of Coastal Research 24(5):1092-1109. 2008
doi: 10.2112/08A-0003.1
High-Resolution Foraminiferal, Isotopic, and Trace Element Records from Holocene Estuarine Deposits of San Francisco Bay, California

U.S. Geological Survey, Coastal and Marine Geology, 345 Middlefield Road, Menlo Park, CA 94025, U.S.A., mmcgann@usgs.gov
Abstract
A 3.5-m gravity core (DJ6-93SF-6) from San Francisco Bay reveals a complex paleoclimatic history of the region over the last 3870 cal YBP. A polynomial equation based on 11 AMS 14C ages provides an excellent age model for the core, and environmental proxies for water temperature and salinity are derived from various foraminiferal abundances, stable carbon and oxygen isotopes, and Mg/Ca ratios. Two foraminiferal associations were identified by Q-mode cluster analysis: a colder-water Elphidium excavatum association and the warmer-water Ammonia beccarii–Elphidium gunteri association. The E. excavatum association dominates the core for all but about 600 years out of the last four millennia.
At 3870 cal YBP, water temperatures were warm (13.9°C) and freshwater inflow was reduced compared with today. From 3590 to 2860 cal YBP, temperatures dropped 0.5°C and the climate remained dry. This was followed by a period of pronounced lower δ13C values, indicating that conditions became considerably wetter from 2860 to 2170 cal YBP. During this interval, the temperature oscillated frequently, peaking at 13.9°C at 2710 cal YBP, then dropping shortly thereafter to 12.8°C at 2420 cal YBP. Freshwater inflow gradually decreased between 2170 and 1950 cal YBP with a minimal rise in temperature, then changed quickly to colder and wetter conditions at 1900 cal YBP. Drier conditions then prevailed until 1480 cal YBP with water temperatures fluctuating between 13.1°C and 13.8°C, followed by wetter climate from 1480 to 1320 cal YBP.
A significant faunal shift from the E. excavatum association to the A. beccarii–E. gunteri association occurred from 1250 to 650 cal YBP, possibly due to regional warming, decreased oxygen availability, and/or a change in the phytoplankton community. Associated with this change in faunal composition were warm and dry conditions, representative of the Medieval Warm Period (Medieval Climatic Anomaly). A climatic shift coincident with the onset of the Little Ice Age (LIA I and LIA II) is evident from 650 to 280 cal YBP, with the return of the E. excavatum association and an extreme drop in δ18O values, all indicating increased precipitation and fresh water inflow. This was followed by generally drier conditions to the present, except for a brief wet period around 100 cal YBP, and fairly consistent water temperatures in the middle 13°C, except for a drop to 12.8°C at 200 cal YBP.
Two significant faunal changes occur near the top of the core. First, there is the reappearance of the A. beccarii–E. gunteri association, suggesting that, once again, regional warming has taken place, oxygen availability has declined, and/or environmental conditions changed such that diatoms have become a scarce food source. Second, there is the first appearance of the invasive Japanese foraminifera Trochammina hadai Uchio, a species that commonly lives in highly polluted areas and is an indicator of eutrophication in its native estuaries. At the same time, freshwater inflow decreased, which may be explained by global warming during the last 100 years, or more likely due to modern water diversion for agriculture in the central valley of California.
Received: 20 February 2008; Accepted: 20 February 2008
Keywords: Climate, San Francisco Bay, Holocene, foraminifers, isotopes, trace metals, Medieval Warm Period, Little Ice Age
LITERATURE CITED
,
,
, and
. 2002. Benthic foraminifera in Long Island Sound as indicators of eutrophication. Geological Society of America, Abstracts with Programs 34:6A-384.
and
. 1983. Stable isotopes of oxygen and carbon and their application to sedimentologic and paleoenvironmental problems. In: Arthur, M.A.; Anderson, T.F.; Kaplan, I.R.; Veizer, J., and Land, L.S. (eds.), Stable Isotopes in Sedimentary Geology. Houston, Texas: Society of Economic Paleontologists and Mineralogists, Short Course no. 10, pp. 10.1-1-1 through 1-1-151.
,
,
, and
. 1980. Trends in the distribution of recent foraminifera in San Francisco Bay. Cushman Foundation for Foraminiferal Research Special Publication 18:17–39.
1979. Ancient processes at the site of southern San Francisco Bay: movement of the crust and changes in sea level. In: Conomos, T.J. (ed.), San Francisco Bay—the Urbanized Estuary. San Francisco: American Association for the Advancement of Science, pp. 31–45.
,
, and
. 1977. Late Quaternary depositional history, Holocene sea-level changes, and vertical crustal movement, southern San Francisco Bay, California. U.S. Geological Survey Professional Paper 1014. 1–15.
,
,
,
,
, and
. 1979. History, landforms and vegetation of the estuary's tidal marshes. In: Conomos, T.J. (ed.), San Francisco Bay—the Urbanized Estuary. San Francisco: American Association for the Advancement of Science, pp. 347–385.
,
, and
. 1981. Stratigraphy of late Quaternary estuarine deposits and amino acid stereochemistry of oyster shells beneath San Franciso Bay, California. Quaternary Research 16:181–200. CrossRef
1953. Ecology and paleoceology of some California foraminifera: Part I, the frequency distribution of recent foraminifera off California. Journal of Paleontology 27:161–182.
1961. Distribution of foraminifera, radiolaria and diatoms in sediments of the Gulf of California. Micropaleontology 7:1–26. CrossRef
,
, and
. 2004. High resolution climate of the past 3,500 years of coastal northernmost California. In: Starratt, S.W. and Blumquist, N.L. (eds.), Proceedings of the Twentieth Annual Pacific Climate Workshop. U.S. Geological Survey, pp. 13–22.
,
,
, and
. 1998. Reevaluation of the oxygen isotopic composition of planktic foraminifera: experimental results and revised paleotemperature equations. Paleoceanography 13:2150–160. CrossRef, CSA
,
, and
. 2002. Using species-specific paleotemperature equations with foraminifera: a case study in the southern California bight. Marine Micropaleontology 46:405–430. CrossRef, CSA
,
, and
. 1975. Sodium, magnesium, and strontium in the tests of planktonic foraminifera. Micropaleontology 21:448–459. CrossRef
1957. Laboratory studies on the rate of growth of the foraminifer “Streblus beccarii (Linné) var. tepida (Cushman).”. Journal of Paleontology 31:1138–1147.
1965. Recent and some Holocene foraminifera of the southern Baltic Sea. Acta Palaeontologica Polonica 10:131–236.
and
. 1996. Variations in Mg/Ca and Sr/Ca ratios of planktic foraminifera caused by postdepositional dissolution: evidence of shallow Mg-dependent dissolution. Paleoceanography 11:543–551. CrossRef, CSA
,
,
,
, and
. 2001. Foraminiferal records of environmental change in Long Island Sound. Geological Society of America, Abstracts with Programs 33:10A83.
,
,
,
,
, and
. 2001. Carbon-isotope, diatom, and pollen evidence for late Holocene salinity change in a brackish marsh in the San Francisco estuary. Quaternary Research 55:66–76. CrossRef, CSA
and
. 1992. Sr/Mg ratios of modern marine calcite: empirical indicators of ocean chemistry and precipitation rate. Geochimica et Cosmochimica Acta 56:1837–1849. CrossRef
,
, and
. 1985. Environmental setting of San Francisco Bay. Hydrobiologia 129:1–12. CrossRef, CSA
,
,
,
, and
. 2003. Medieval Warm Period, Little Ice Age and 20th century temperature variability from Chesapeake Bay. Global and Planetary Change 36:17–29. CrossRef, CSA
,
, and
. 1985. Li, Sr, Mg, and Na in foraminiferal calcite shells from laboratory culture, sediment traps, and sediment cores. Geochimica et Cosmochimica Acta 49:1327–1341. CrossRef
,
,
, and
. 1981. Seasonal changes in species composition, numbers, mass, size, and isotopic composition of planktic foraminifera settling into the deep Sargasso Sea. Palaeogeography, Palaeoclimatology, Palaeoecology 33:103–127. CrossRef
1983. BMDP Statistical Software. Berkeley, California: University of California Press. 733. p.
1955. Pleistocene temperatures. Journal of Geology 63:538–578.
,
,
, and
. 1989. Atmospheric circulation during Holocene lake stands in the Mojave Desert: evidence of regional climate change. Nature 341:44–47. CrossRef, CSA
,
,
, and
. 1953. Revised carbonate-water isotope temperature scale. Geological Society of America Bulletin 64:1315–1325. CrossRef
and
. 1983. Experimental paleotemperature equation for planktic foraminifera. Geochemica et Cosmochimia Acta 47:1025–1031. CrossRef
,
, and
. 1980. Vertical distribution and isotopic composition of living planktic foraminifera in the western North Atlantic. Science 207:61–63. CrossRef, PubMed
1972. The foraminifer Elphidium excavatum (Terquem) and its variant forms. Micropaleontology 18:337–354. CrossRef
,
, and
. 1979. Variations in climate since 1602 as reconstructed from tree rings. Quaternary Research 12:18–46. CrossRef
1917. Hydraulic-mining debris in the Sierra Nevada. U.S. Geological Survey Professional Paper. 105:154. p.
and
. 2000. Trends in river flow affecting the northeastern reach of San Francisco Bay estuary over the past 7000 years. Quaternary Research 54:206–217. CrossRef, CSA
1982. Stable Isotopes in Live Benthic Foraminifera from the Southern California Borderland. Los Angeles, California: University of Southern California, Ph.D. thesis. 164. p.
1984. Carbon isotopic fractionation in live benthic foraminifera—comparison with inorganic precipitate studies. Geochimica et Cosmochimica Acta 48:1505–1512. CrossRef
1987. Stable isotopes in modern benthic foraminifera: a study of vital effect. Journal of Foraminiferal Research 17:148–61.
1962. Untersuchungen an der Foraminiferen-Fauna im Wattgebiet zwischen Langeoog und dem Festland. Meyniana, Veroffentlichungen aus dem Geologischen Institute der Universitat Kiel 12:25–64.
1967. Zum Jahresgang von Population eneiner Foraminiferen-Art in der westlichen Ostsee. Meyniana, Veroffentlichungen aus dem Geologischen Institute der Universitat Kiel 17:13–27.
and
. 1996. Calcite dissolution in sediments of the Ontong-Java Plateau: in situ measurements of pore water O2 and pH. Global Biogeochemical Cycles 10:527–541. CrossRef
1998. California Geology. New Jersey: Prentice Hall. 479. p.
,
, and
. 1998. Foraminiferal magnesium in Globigerinoides sacculifer as a paleotemperature proxy. Paleoceanography 13:161–169. CrossRef, CSA
,
,
,
, and
. 1999. Historical trends of metals in the sediments of San Francisco Bay, California. Marine Chemistry 64:39–55. CrossRef, CSA
,
, and
. 1996. Stable isotope and salinity systematics in estuarine waters and carbonates: San Francisco Bay. Geochimica et Cosmochimica Acta 60:3455–467. CrossRef, CSA
,
,
,
, and
. 1998. Stable isotopes, Sr/Ca, and Mg/Ca in biogenic carbonates from Petaluma Marsh, Northern California, USA. Geochimica et Cosmochimica Acta 62:19/203229–3237. CrossRef
and
. 1993. A 4300 year strontium isotope record of estuarine paleosalinity in San Francisco Bay, California. Earth and Planetary Science Letters 119:103–119. CrossRef, CSA
,
, and
. 1996a. A 2000 yr record of Sacramento-San Joaquin River inflow to San Francisco estuary, California. Geology 24:331–334. CrossRef, CSA
,
, and
. 1996b. Stable isotope record of late Holocene salinity and river discharge in San Francisco Bay, California. Earth and Planetary Science Letters 141:237–247. CrossRef, CSA
and
. 1992. Strontium isotopic composition of estuarine sediments as paleosalinity-paleoclimate indicator. Science 255:68–72. CrossRef, PubMed, CSA
and
. 1996. Reservoir ages in eastern Pacific coastal and estuarine waters. Radiocarbon 38:573–582.
and
. 1997. Equilibrium and nonequilibrium oxygen isotope effects in synthetic calcites. Geochimica et Cosmochimica Acta 61:3461–3475. CrossRef
1994. Foraminiferal microhabitats in four marine environments around Japan. Marine Micropaleontology 24:29–41. CrossRef, CSA
1996. Laboratory observations of sexual and asexual reproduction of Trochammina hadai Uchio. Proceedings of the Palaeontological Society of Japan, Transactions. New Series 182:454–466.
and
. 1987. Change of foraminiferal thanatocoe-noses of the Osaka Bay during the late fifty years. Bulletin of Kansai Organization for Nature Conservation 14:11–22. [in Japanese].
and
. 1989. Change of foraminiferal thanatocoe-noses in Tanabe Bay, Kii Peninsula, during the last thirty years. In: Takayanagi, Y. and Ishizaki, K. (eds.), Collected Papers on Foraminifera from the Japanese Islands. Sendai: Toko Press, pp. 105–110. [in Japanese].
1973. Holocene climate variations inferred from treeline fluctuations in the White Mountains, California. Quaternary Research 3:632–650. CrossRef
1894. The geomorphogeny of the coast of Northern California. University of California, Department of Geology Bulletin 1:241–271.
1914. San Francisco Folio. U.S. Geological Survey Atlas of the United States 23. 24. p.
1999. Trace elements in foraminiferal calcite. In: Sen Gupta, B.K. (ed.), Modern Foraminifera. Dordrecht, The Netherlands: Kluwer Academic Publishers, pp. 259–277.
,
, and
. 1999. Controls on magnesium and strontium uptake in planktic foraminifera determined by live culturing. Geochimica et Cosmochimica Acta 63:162369–2379. CrossRef
,
, and
. 2002. Benthic foraminiferal Mg/Ca paleothermometry: a revised core-top calibration. Geochimica et Cosmochimica Acta 66:3375–3387. CrossRef
1971. Sedimentation and Foraminiferal Aspects of the Recent Sediments of San Pablo Bay. San Jose, California: San Jose State College, Master's thesis. 100. p.
1941. Development of San Francisco Bay. Geological Society of America Abstract 52:1952.
1951. Geologic history of San Francisco Bay, California. California Division of Mines and Geology Bulletin 154:75–94.
1965. Zur Foraminiferenfauna der Ostsee. Meyniana, Veroffentlichungen aus dem Geologischen Institute der Universitat Kiel 15:75–142.
,
, and
. 2003. Natural climate variability and human impact on a brackish tidal marsh in northern San Francisco Bay, CA. Geological Society of America Abstracts with Programs 35:6201.
and
. 2003. Late Holocene variability of upper North Atlantic deep water temperature and salinity. Geochemistry Geophysics Geosystems 4:121–12. CrossRef
,
,
,
,
, and
. 2002. Quaternary deep sea temperature histories derived from benthic foraminiferal Mg/Ca. Earth and Planetary Science Letters 198:193–209. CrossRef, CSA
,
, and
. 1999. Glacial-interglacial changes in subantarctic sea surface temperature and δ18O-water using foraminiferal Mg. Earth and Planetary Science Letters 170:417–432. CrossRef, CSA
1970. Distribution of recent shallow water foraminifera of Matsushima Bay, Miyagi Prefecture, northeast Japan. Science Reports of Tohoku University, 2nd series (Geology) 42:11–85.
and
. 1990. Seasonality in the benthic foraminiferal community and the life history of Trochammina hadai Uchio in Hamana Lake, Japan. In: Hemleben, C.; Kaminski, M.A.; Kuhnt, W., and Scott, D. (eds.), Paleoecology, Biostratigraphy, Paleoceanography and Taxonomy of Agglutinated Foraminifera. Dordrecht, The Netherlands: Kluwer Academic Publishers, pp. 695–715.
and
. 1990. The influence of microhabitats on the carbon isotopic composition of deep-sea benthic foraminifera. Paleoceanography 5:161–185. CrossRef, CSA
,
,
, and
. 1995. Evidence of a dissolution effect on benthic shell chemistry: δ13C, Cd/Ca, Ba/Ca, and Sr/Ca from the Ontong Java Plateau. Paleoceanongraphy 10:699–714. CrossRef
1950. On the isotopic chemistry of carbonates and a paleotemperature scale. Journal of Chemical Physics 18:6849–857. CrossRef
and
. 1930. A preliminary report on the foraminifera of San Francisco Bay, California. Micropaleontology Bulletin 2:33–37.
1995. 3500-year B.P. record of climatic change in estuarine deposits of south San Francisco Bay, California. In: Sanginés, E.M.; Anderson, D.W., and Buising, A.V. (eds.), Recent Geologic Studies in the San Francisco Bay Area. Fullerton, California: Society of Economic Paleontologists and Mineralogists, Pacific Section, Book 76, pp. 225–236.
1999. Vertical distribution of foraminifers, including the non-indigenous species Trochammina hadai, in south San Francisco Bay. In: Fourth Biennial State of the Estuary Conference Abstract Volume, 77.
and
. 1999. Benthic foraminifers in the Regional Monitoring Program's San Francisco Bay estuary samples. In: 1997 Annual Report: San Francisco Estuary Regional Monitoring Program for Trace Substances. Richmond, California: San Francisco Estuary Institute, pp. 249–258.
,
, and
. 2000. Invasion by a Japanese marine microorganism in western North America. Hydrobiologia 421:25–30. CrossRef
,
, and
. 2002. Biostratigraphy beneath central San Francisco Bay along the San Francisco-Oakland Bay Bridge transect. In: Parsons, T., (ed.), Crustal Structure of the Coastal and Marine San Francisco Bay Region, California. U.S. Geological Survey Professional Paper 1658, pp. 11–28.
1965. Sediments and foraminifera of Richardson Bay, California. Los Angeles, California: University of Southern California, Master's thesis. 80. p.
1979. Taxonomy, morphology and microprobe analysis of the recent foraminifer Elphidium excavatum (Terquem) from a Labrador shelf sediment core. Kingston, Ontario, Canada: Queen's University, Bachelor's thesis. 105. p.
,
, and
. 1982. Elphidium excavatum (Terquem): ecophenotypic versus subspecific variation. Journal of Foraminiferal Research 12:2116–144.
and
. 1992. Tolerance of infaunal benthic foraminifera for low and high oxygen concentrations. Biological Bulletin 183:94–98. CrossRef, CSA
and
. 1990. Partition coefficients in calcite: examination of factors influencing the validity of experimental results and their application to natural systems. Chemical Geology 82:265–277. CrossRef
and
. 1983. The incorporation of Mg2+ and Sr2+ into calcite overgrowths: influences of growth rate and solution composition. Geochimica et Cosmochimica Acta 47:217–233. CrossRef, CSA
1965. On the foraminifera of the Plymouth region. Journal of the Marine Biology Association, United Kingdom 45:485–505.
1970. Foraminifera of the western approaches to the English Channel. Micropaleontology 16:4471–485. CrossRef
1973. Distribution and Ecology of Living Benthic Foraminiferids. New York: Crane, Russak & Co. 274. p.
1991. Ecology and Palaeoecology of Benthic Foraminifera. New York: John Wiley. 397. p.
1938. New species of foraminifera from off the West Coast of North America and from the later Tertiary of the Los Angeles Basin. Scripps Institute of Oceanography Bulletin, Technical Series 4:137–164.
,
,
, and
. 1986. The modification of an estuary. Science 231:567–573. CrossRef, PubMed, CSA
1995. Magnesium in tests of Neogloboquadrina pachyderma sinistral from high northern and southern latitudes. Journal of Foraminiferal Research 25:4350–368.
,
, and
. 1996. Assessing the reliability of magnesium in foraminiferal calcite as a proxy for water mass temperatures. Geochimica et Cosmochimica Acta 60:5803–814. CrossRef, CSA
1952. Foraminiferal distribution in the Long Island Sound-Buzzards Bay area. Bulletin of the Harvard Museum of Comparative Zoology 106:425–473.
1965. Patterns of marsh foraminifera, Galveston Bay, Texas. Limnology and Oceanography 10:Supplement R. 169–184. CSA
1970. Foraminiferal populations and marine marsh processes. Limnology and Oceanography 15:4522–534.
and
. 1962. Sedimentology and oceanography of coastal lagoons in Baja California, Mexico. Geological Society of America Bulletin 73:145–182. CrossRef
1976. The foraminiferal community of San Antonio Bay. In: Bouma, A.H. (ed.), Shell Dredging and Its Influence on Gulf Coast Environments. Houston, Texas: Gulf Publication, pp. 304–336.
1978. Paired foraminiferal ecophenotypes in Gulf Coast estuaries: ecological and paleoecological implications. Transactions of the Gulf Coast Association of Geological Societies 28:395–421.
1968. Distribution of Recent Foraminifera in Central and South San Francisco Bay. San Jose, California: San Jose State College, Master's thesis. 83. p.
and
. 1958. Engineering geology of the Islais Creek Basin, San Francisco, California. U.S. Geological Survey Miscellaneous Geological Investigations Map, I-264, scale 1:12000.
and
. 1997. Magnesium and strontium compositions of recent benthic foraminifera from the Coral Sea, Australia and Prydz Bay, Antarctica. Marine Micropaleontology 32:231–248. CrossRef, CSA
and
. 1993. Factors controlling the fluoride content of planktonic foraminifera: an evaluation of its paleoceanographic utility. Geochimica et Cosmochimica Acta 57:335–346. CrossRef
,
, and
. 1997. Temperature control on the incorporation of magnesium, strontium, fluorine, and cadmium into benthic foraminiferal shells from Little Bahama Bank: prospects for thermocline paleoceanography. Geochimica et Cosmochimica Acta 61:173633–3643. CrossRef, CSA
1977. The Pleistocene history of San Francisco Bay along the Southern Crossing. San Jose, California: San Jose State College, Master's thesis. 121. p. 
and
. 1973. Stable isotope and magnesium geochemistry of Recent planktonic foraminifera from the South Pacific. Geological Society of America Bulletin 84:2327–2342. CrossRef
1968. Ecology of Benthic Foraminifera in Western Long Island Sound and Adjacent Nearshore Waters. Atlantic Oceanographic Laboratory Report. no. 68-848. p.
1940. Applied paleontology. American Association of Petroleum Geologists Bulletin 24:1752–1778.
1974. Ecotypic variation in Ammonia beccarii (Linné). Journal of Foraminiferal Research 4:217–223.
and
. 1980. Quantitative studies of marsh foraminiferal distributions in Nova Scotia: implications for sea level studies. Cushman Foundation for Foraminiferal Research Special Publication 17:58. p.
1975. Foraminifera of Guyanilla Bay and their use as environmental indicators. Revista Española de Micropaleontología 8:453–487.
1971. The benthic foraminifera of the Tail of the Grand Banks. Micropaleontology 17:69–98. CrossRef
,
, and
. 1996. Seasonal oxygen depletion in continental-shelf waters of Louisiana: historical record of benthic foraminifers. Geology 24:227–230. CrossRef, CSA
1974. Attainment of isotopic equilibrium between ocean water and the benthonic foraminifera genus Uvigerina: isotopic changes in the ocean during the last glacial. Centre National de la Recherche Scientifique (CNRS), Colloques Internationals 219:203–209.
and
. 1973. Oxygen isotope and paleomagnetic stratigraphy of equatorial Pacific core V28-238: oxygen isotope temperatures and ice volumes on a 105 and 106 year scale. Quaternary Research 3:39–55. CrossRef
1965. Sedimentary Environments in Suisun Bay, California. Los Angeles, California: University of Southern California, Master's thesis. 104. p.
1980. Foraminifera of Sangamon(?) estuarine deposits beneath central San Francisco Bay, California. In: Field, M.E; Bouma, A.H.; Colburn, I.P.; Douglas, R.G., and Ingle, J.C., (eds.), Quaternary Depositional Environments of the Pacific Coast. Society of Economic Paleontologists and Mineralogists, Pacific Section. Pacific Coast Paleogeography Symposium 4, pp. 1–12.
1981. Ecostratigraphic Study of Sangamon sediments beneath Central San Francisco Bay. Berkeley, California: University of California, Ph.D. thesis. 316. p.
1992. The Yerba Buena mud: record of the last-interglacial predecessor of San Francisco Bay, California. Geological Society of America Bulletin 104:716–727. CrossRef
2006. Geology of the San Francisco Bay Region. California Natural History Guide Series No. 79. Berkeley: University of California Press. 318. p.
1979. Subsurface stratigraphy and geochemistry of late Quaternary evaporites, Searles Lake, California. U.S. Geological Survey Professional Paper 1043. 130. p.
,
,
, and
. 1997. Effect of seawater carbonate concentration on foraminiferal carbon and oxygen isotopes. Nature 390:497–500. CrossRef, CSA
and
. 1993. Intraspecific stable isotope variability in the planktic foraminifera Globigerinoides sacculifer: results from laboratory experiments. Marine Micropaleontology 22:221–234. CrossRef, CSA
and
. 1996. Experimental determination of stable isotope variability in Globigerina bulloides: implications for paleoceanographic reconstruction. Marine Micropaleontology 28:231–246. CrossRef, CSA
1980. The behavior of 14C and 13C in estuarine water: effects of in situ CO2 production and atmospheric exchange. Radiocarbon 22:647–654.
2004. Diatoms as indicators of late Holocene freshwater flow variation in the San Francisco Bay estuary, central California, U.S.A. In: Poulin, M. (ed.), Proceedings of the Seventeenth International Diatom Symposium. Bristol, England: Biopress Ltd., pp. 371–397.
1990. Late Holocene fluctuations of Mono Lake, eastern California. Palaeogeography, Palaeoclimatology, Palaeoecology 78:333–381. CrossRef
1994. Extreme and persistent drought in California and Patagonia during Medieval time. Nature 369:546–548. CrossRef, CSA
,
,
,
,
,
,
,
,
,
, and
. 1998. INTCAL98 radiocarbon age calibration 24,000–0 cal BP. Radiocarbon 40:1041–1083.
,
,
, and
. 2000a. Changes in environment and biota in Long Island Sound: the last 40 years. Long Island Sound Lobster Health Symposium. http://ethomas.web.wesleyan.edu/lisweb/index.html (accessed March 2004).
,
,
,
, and
. 2000b. Benthic foraminifera and environmental changes in Long Island Sound. Journal of Coastal Research 16:3641–655. CSA
,
,
,
,
, and
. 2001. Foraminiferal records of environmental change in Long Island Sound. Geological Society of America, Abstracts with Program 33:1A-83.
and
. 1951. Engineering geology of San Francisco Bay, California. Geology Society of America Bulletin 62:1079–1110. CrossRef
1963. Geology of the sedimentary deposits in San Francisco Bay, California. California Division of Mines and Geology Special Report 82:11–24.
1962. Influence of the River Shinano on foraminifera and sediment grain size distributions. Publication of the Seto Marine Laboratory Kyoto University, Sirahama, Japan. 10:2363–392.
1947. The thermodynamic properties of isotopic substances. Journal of the Chemical Society 1947:562–581.
and
. 1999. A record of estuarine water contamination from the Cd content of foraminiferal tests in San Francisco Bay, California. Marine Chemistry 64:57–69. CrossRef, CSA
,
,
,
,
, and
. 1992. Evidence from Cd/Ca ratios in foraminifera for greater upwelling off California 4,000 years ago. Nature 358:54–56. CrossRef, CSA
,
,
, and
. 2002. The paleoenvironmental history of Long Island Sound as traced by organic carbon, biogenic silica and stable isotope/trace element studies in sediment cores. Proceedings of the 6th Biennual Long Island Sound Research Conference, Groton, CT. http://ethomas.web.wesleyan.edu/lisweb/Lis6Varekamp.htm (accessed extended abstract in March, 2004).
1978. Environmental History of Central San Francisco Bay with Emphasis on Foraminiferal Paleontology and Clay Mineralogy. Berkeley, California: University of California, Ph.D. thesis. 274. p.
1982. Foraminiferal Distributions and Environmental History of the Quaternary San Francisco Bay. American Association of Petroleum Geologists Bulletin Pacific Section. Abstract. 66:1702.
1955. Ecology of living benthic foraminifera, Todos Santos Bay, Baja California. Journal of Paleontology 29:952–1018.
,
, and
. 1979. Seasonal oxygen isotopic variations in living planktic foraminifera off Bermuda. Science 206:447–449. CrossRef, PubMed
,
, and
. 1981. Seasonal stable isotopic variations in living planktic foraminifera from Bermuda plankton tows. Palaeogeography, Palaeoclimatology, Palaeoecology 33:71–102. CrossRefFigure 1. San Francisco Bay estuary, showing the location of core DJ6-93SF-6 and the location of previous study sites, including China Camp, Petaluma Marsh, Peyton Hill, Rush Ranch, and Brown's Island.
Figure 3. Sediment thickness (cm) plotted versus age (cal YBP) in core DJ6-93SF-6. Sedimentation rate calculated in mm/yr based on the age-depth model.
Figure 4. Percentage abundance of the benthic foraminifera plotted with depth and estimated age (cal YBP) in core DJ6-93SF-6. Shaded regions correspond to the occurrence of the Ammonia beccarii–Elphidium gunteri association (Cluster B).
Figure 5. Q-mode cluster diagram of the 36 samples (depth in cm) from core DJ6-93SF-6. The samples were grouped into two clusters (A: Elphi-dium excavatum association; B: Ammonia beccarii–Elphidium gunteri association) and one outlier (C: Trochammina hadai).
Figure 6. Ammonia–Elphidium (A-E) Index plotted with depth and estimated age (cal YBP) in core DJ6-93SF-6. Shaded regions correspond to the occurrence of the Ammonia beccarii–Elphidium gunteri association (Cluster B).
Figure 7. Mg/Ca ratios of Elphidium excavatum and temperature plotted with depth and estimated age (cal YBP) in core DJ6-93SF-6. Shaded regions correspond to the occurrence of the Ammonia beccarii–Elphidium gunteri association (Cluster B).
Figure 8. Sr/Ca ratios of Elphidium excavatum plotted with depth and estimated age (cal YBP) in core DJ6-93SF-6. An increase in the Sr/Ca ratio may be a proxy for increasing temperature and salinity. Shaded regions correspond to the occurrence of the Ammonia beccarii–Elphidium gunteri association (Cluster B).
Figure 9. δ18O (A) and δ13C (B) relative to VPDB standard plotted with estimated age (cal YBP) and depth in core DJ6-93SF-6. Shaded regions correspond to the occurrence of the Ammonia beccarii–Elphidium gunteri association (Cluster B).
Figure 10. Estimated values of δ13C and δ18O in south bay water as a function of mixing between sea water and river water. Oxygen isotopic values (relative to VSMOW) versus salinity (filled squares) are for waters collected in March, 1992, as reported in Ingram et al. (1996c).
Table 1. Estimated sediment age (cal YBP and years BC/AD), species abundances, Ammonia–Elphidium (A-E) index, and Q-mode cluster grouping of the benthic foraminifers in core DJ6-93SF-6. Species abundances are given as percentage of the total benthic foraminiferal fauna
Table 2. Radiocarbon data for benthic foraminiferal samples from core DJ6–93SF-6. Calendar ages determined using a ΔR = 323 ± 52 following Stuiver et al., 1998.
Table 3. Estimated core age (cal YBP), stable isotopes, and trace elements measured in Elphidium excavatum with depth in core DJ6-93SF-6. Trace element data are not available for samples 320–318 cm and 330–328 cm.
Table 4. Estimated core age (cal YBP and years BC/AD), Mg/Ca ratios, and oxygen isotope values measured in Elphidium excavatum, estimated water temperature and salinity, Q-mode cluster grouping, and climatic period with depth in core DJ6-93SF-6. LIA I = early Little Ice Age and LIA II = late Little Ice Age. Water temperature not estimated for sample from 1–2.5 cm because of suspected sample contamination. Mg/Ca data are not available for samples 320–318 cm and 330–328 cm











