The Arabidopsis Book

 A living reference work, this book is continually added to and modified.  The most recent update was made June 2009.

Published by: The American Society of Plant Biologists

Table of Contents

Nov 2009

Cellular Processes

Peroxisome Biogenesis and Function open access

Navneet Kaur, Sigrun Reumann, and Jianping Hu
pg(s) 1–41

Abstract & References : Full Text : PDF (1248 KB) : Supplementary Materials 

The Arabidopsis Cell Division Cycle open access

Crisanto Gutierrez
pg(s) 1–19

Abstract & References : Full Text : PDF (1738 KB) 

The Secretory System of Arabidopsis open access

Diane C. Bassham, Federica Brandizzi, Marisa S. Otegui, and Anton A. Sanderfoot
pg(s) 1–29

Abstract & References : Full Text : PDF (666 KB) : Supplementary Materials 

The Clickable Guard Cell, Version II: Interactive Model of Guard Cell Signal Transduction Mechanisms and Pathways open access

June M. Kwak, Pascal Mäser, Julian I. Schroeder
pg(s) 1–17

Abstract & References : Full Text : PDF (609 KB) : Supplementary Materials 

Mitochondrial Biogenesis and Function in Arabidopsis open access

A. Harvey Millar, Ian D. Small, DavidA. Day, and James Whelan
pg(s) 1–33

Abstract & References : Full Text : PDF (1556 KB) : Supplementary Materials 

The Arabidopsis Cytoskeletal Genome open access

Richard B. Meagher and Marcus Fechheimer
pg(s) 1–26

Abstract & References : Full Text : PDF (786 KB) 

A Molecular Portrait of Arabidopsis Meiosis open access

Hong Ma
pg(s) 1–39

Abstract & References : Full Text : PDF (11896 KB) 

The Protein Phosphatases and Protein Kinases of Arabidopsis thaliana open access

Huachun Wang, David Chevalier, Clayton Larue, Sung Ki Cho, and John C. Walker
pg(s) 1–38

Citation : Full Text : PDF (2778 KB) 

Chloroplast Biogenesis: Control of Plastid Development, Protein Import, Division and Inheritance open access

Wataru Sakamoto, Shin-ya Miyagishima, Paul Jarvis
pg(s) 1–30

Abstract & References : Full Text : PDF (3928 KB) 

Development

Embryogenesis: Pattern Formation from a Single Cell open access

Arnaud Capron, Steven Chatfield, Nicholas Provart, and Thomas Berleth
pg(s) 1–28

Abstract & References : Full Text : PDF (6145 KB) : Supplementary Materials 

Stomatal Development in Arabidopsis open access

Jeanette A. Nadeau and Fred D. Sack
pg(s) 1–28

Abstract & References : Full Text : PDF (1462 KB) 

Photomorphogenesis open access

Jennifer Nemhauser and Joanne Chory
pg(s) 1–12

Citation : Full Text : PDF (209 KB) 

Phytochrome Signaling Mechanism open access

Haiyang Wang and Xing Wang Deng
pg(s) 1–28

Citation : Full Text : PDF (2054 KB) : Supplementary Materials 

Seed Dormancy and Germination open access

Leónie Bentsink and Maarten Koornneef
pg(s) 1–18

Abstract & References : Full Text : PDF (513 KB) : Supplementary Materials 

Root Hairs open access

Claire Grierson and John Schiefelbein
pg(s) 1–22

Citation : Full Text : PDF (1212 KB) 

Root Development open access

Ben Scheres, Philip Benfey, Liam Dolan
pg(s) 1–18

Citation : Full Text : PDF (839 KB) 

Leaf Development open access

Hirokazu Tsukaya
pg(s) 1–23

Abstract & References : Full Text : PDF (881 KB) 

Vascular Patterning open access

Simon Turner and Leslie E. Sieburth
pg(s) 1–23

Citation : Full Text : PDF (1902 KB) 

Fruit Development in Arabidopsis open access

Adrienne H. K. Roeder and Martin F. Yanofsky
pg(s) 1–50

Citation : Full Text : PDF (8598 KB) 

Polar Auxin Transport and Asymmetric Auxin Distribution open access

Marta Michniewicz, Philip B. Brewer, Jiří Friml
pg(s) 1–28

Citation : Full Text : PDF (585 KB) 

Environment

The Powdery Mildew Disease of Arabidopsis: A Paradigm for the Interaction between Plants and Biotrophic Fungi open access

Cristina Micali, Katharina Göllner, Matt Humphry, Chiara Consonni, and Ralph Panstruga
pg(s) 1–19

Abstract & References : Full Text : PDF (5168 KB) 

The Arabidopsis Circadian System open access

C. Robertson McClung, Patrice A. Salomé, Todd P. Michael
pg(s) 1–23

Abstract & References : Full Text : PDF (457 KB) 

Arabidopsis thaliana: A Model for the Study of Root and Shoot Gravitropism open access

Patrick H. Masson, Masao Tasaka, Miyo T. Morita, Changhui Guan, Rujin Chen, and Kanokporn Boonsirichai
pg(s) 1–23

Abstract & References : Full Text : PDF (429 KB) 

Oxidative Stress and Acclimation Mechanisms in Plants open access

Ruth Grene
pg(s) 1–20

Citation : Full Text : PDF (411 KB) 

Salt Tolerance open access

Liming Xiong and Jian-Kang Zhu
pg(s) 1–22

Abstract & References : Full Text : PDF (418 KB) 

The Arabidopsis Thaliana-Pseudomonas Syringae Interaction open access

Fumiaki Katagiri, Roger Thilmony, Sheng Yang He
pg(s) 1–35

Citation : Full Text : PDF (810 KB) 

The Use of Arabidopsis to Study Interactions between Parasitic Angiosperms and Their Plant Hosts open access

Y. Goldwasser, J. H. Westwood, J. I. Yoder
pg(s) 1–17

Abstract & References : Full Text : PDF (378 KB) 

Phototropism: Mechanisms and Outcomes open access

Emmanuel Liscum
pg(s) 1–21

Citation : Full Text : PDF (356 KB) 

Arabidopsis and the Genetic Potential for the Phytoremediation of Toxic Elemental and Organic Pollutants open access

Christopher S. Cobbett and Richard B. Meagher
pg(s) 1–22

Abstract & References : Full Text : PDF (310 KB) 

Interactions Between Xanthomonas Species and Arabidopsis thaliana open access

C. Robin Buell
pg(s) 1–11

Abstract & References : Full Text : PDF (194 KB) 

Arabidopsis-Insect Interactions open access

Remco M. P. Van Poecke
pg(s) 1–34

Citation : Full Text : PDF (3483 KB) 

Genetics, Genomics and Genes

Web-Based Arabidopsis Functional and Structural Genomics Resources open access

Yan Lu and Robert L. Last
pg(s) 1–14

Abstract & References : Full Text : PDF (286 KB) 

Arabidopsis Variegation Mutants open access

Steven Rodermel
pg(s) 1–28

Citation : Full Text : PDF (750 KB) 

Powerful Partners: Arabidopsis and Chemical Genomics open access

Stéphanie Robert,, Natasha V. Raikhel, and Glenn R. Hicks ,
pg(s) 1–16

Abstract & References : Full Text : PDF (253 KB) : Supplementary Materials 

Growth Regulators

Gibberellin Metabolism, Perception and Signaling Pathways in Arabidopsis open access

Tai-ping Sun
pg(s) 1–28

Abstract & References : Full Text : PDF (1993 KB) 

Cytokinins open access

Joseph J. Kieber
pg(s) 1–25

Citation : Full Text : PDF (550 KB) 

Ethylene open access

G. Eric Schaller and Joseph J. Kieber
pg(s) 1–18

Citation : Full Text : PDF (358 KB) 

Abscisic Acid Biosynthesis and Response open access

Ruth R. Finkelstein and Christopher D. Rock
pg(s) 1–48

Citation : Full Text : PDF (881 KB) 

Brassinosteroids open access

Steven D. Clouse
pg(s) 1–23

Citation : Full Text : PDF (408 KB) 

Metabolism

Trehalose Metabolites in Arabidopsis—elusive, active and central open access

Henriette Schluepmann and Matthew Paul
pg(s) 1–17

Abstract & References : Full Text : PDF (5663 KB) 

Aspartate-Derived Amino Acid Biosynthesis in Arabidopsis thaliana open access

Georg Jander and Vijay Joshi
pg(s) 1–15

Abstract & References : Full Text : PDF (534 KB) 

Cytochromes P450 open access

Danièle Werck-Reichhart, Søren Bak, Suzanne Paquette
pg(s) 1–28

Abstract & References : Full Text : PDF (1350 KB) 

Repair of Damaged Bases open access

Anne Britt
pg(s) 1–13

Citation : Full Text : PDF (225 KB) 

Storage Proteins open access

Toru Fujiwara, Eiji Nambara, Kazutoshi Yamagishi, Derek B. Goto, and Satoshi Naito
pg(s) 1–12

Abstract & References : Full Text : PDF (185 KB) 

Phosphate Transport and Homeostasis in Arabidopsis open access

Yves Poirier and Marcel Bucher
pg(s) 1–35

Citation : Full Text : PDF (1013 KB) 

Cuticular Waxes of Arabidopsis open access

Matthew A. Jenks, Sanford D. Eigenbrode, Bertrand Lemieux
pg(s) 1–22

Citation : Full Text : PDF (832 KB) 

Molecular Genetics of Non-processive Glycosyltransferases open access

Nicholas J. Price, Wolf-Dieter Reiter, Natasha V. Raikhel
pg(s) 1–7

Citation : Full Text : PDF (233 KB) 

The Oxylipin Pathway in Arabidopsis open access

Robert A. Creelman and Rao Mulpuri
pg(s) 1–24

Abstract & References : Full Text : PDF (547 KB) 

Primary N-assimilation into Amino Acids in Arabidopsis open access

Gloria M. Coruzzi
pg(s) 1–17

Citation : Full Text : PDF (3379 KB) 

The Biopolymers Cutin and Suberin open access

Christiane Nawrath
pg(s) 1–14

Citation : Full Text : PDF (202 KB) 

Sulfate Metabolism open access

Thomas Leustek
pg(s) 1–16

Citation : Full Text : PDF (437 KB) 

Purine and Pyrimidine Nucleotide Synthesis and Metabolism open access

Barbara A. Moffatt and Hiroshi Ashihara
pg(s) 1–20

Citation : Full Text : PDF (237 KB) 

Sterol Metabolism open access

Pierre Benveniste
pg(s) 1–31

Citation : Full Text : PDF (311 KB) 

Molecular and Developmental Biology of Inorganic Nitrogen Nutrition open access

Nigel M. Crawford and Brian G. Forde
pg(s) 1–25

Citation : Full Text : PDF (498 KB) 

Arabidopsis Chitinases: a Genomic Survey open access

Paul A. Passarinho and Sacco C. de Vries
pg(s) 1–25

Abstract & References : Full Text : PDF (1896 KB) 

Storage Reserve Mobilisation and Seedling Establishment in Arabidopsis open access

Steven Penfield, Helen M. Pinfield-Wells, Ian A. Graham
pg(s) 1–17

Citation : Full Text : PDF (2164 KB) 

Storage Reserve Accumulation in Arabidopsis: Metabolic and Developmental Control of Seed Filling open access

Sébastien Baud, Bertrand Dubreucq, Martine Miquel, Christine Rochat, and Loïc Lepiniec
pg(s) 1–24

Abstract & References : Full Text : PDF (2478 KB) 

Regulatory Processes

Sugar Sensing and Signaling open access

Matthew Ramon, Filip Rolland, Jen Sheen
pg(s) 1–22

Abstract & References : Full Text : PDF (441 KB) 

Transcriptional Regulation: a Genomic Overview open access

José Luis Riechmann
pg(s) 1–46

Abstract & References : Full Text : PDF (1304 KB) 

Genes and Proteins for Solute Transport and Sensing open access

Uwe Ludewig and Wolf B. Frommer
pg(s) 1–32

Citation : Full Text : PDF (944 KB) : Supplementary Materials 

Two-Component Signaling Elements and Histidyl-Aspartyl Phosphorelays open access

G. Eric Schaller, Joseph J. Kieber, Shin-Han Shiu
pg(s) 1–12

Abstract & References : Full Text : PDF (1189 KB) : Supplementary Materials 

Transcription and Tyranny in the Nucleolus: The Organization, Activation, Dominance and Repression of Ribosomal RNA Genes. open access

Craig S. Pikaard
pg(s) 1–23

Citation : Full Text : PDF (377 KB) 

DNA Methylation and Demethylation in Arabidopsis open access

Mary Gehring and Steven Henikoff
pg(s) 1–14

Citation : Full Text : PDF (867 KB) 

General Topics

Taxonomy and Phylogeny of Arabidopsis (Brassicaceae) open access

Ihsan A. Al-Shehbaz and Steve L. O'Kane Jr
pg(s) 1–22

Abstract & References : Full Text : PDF (370 KB) 

Ecology and Evolutionary Biology of Arabidopsis open access

Massimo Pigliucci
pg(s) 1–20

Abstract & References : Full Text : PDF (280 KB) 

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